Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 63.9 bits (154), Expect = 5e-15
 Identities = 62/286 (21%), Positives = 134/286 (46%), Gaps = 31/286 (10%)

Query: 47  DLTKLGVFLEFAQQRLEKEPDELYKT---DFIKFFNYLEKERKISKNTQNRYFNLLKVFY 103
           D+ KL  F++   + L+  P+++      DF+++ N    E  ++ ++Q R  + ++ FY
Sbjct: 31  DVRKLVDFMD--AKGLQVAPEDMKPAILRDFLEWIN----ELGMTPHSQARTLSGIRAFY 84

Query: 104 RAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVV 163
           +   +++ M    +++      + +++ K  D +   ++  +++ I +  +    R+  +
Sbjct: 85  KFLIMEDMM----QTDPTDTIEAPKLDRKLPDTLAFHEIEQLLSAI-DLSTPEGTRNRAM 139

Query: 164 IRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLAS--- 220
           +  L+ +G RVSE+L+L+  +   + G  ++   K  +ER V    D L+ ++       
Sbjct: 140 LETLYSSGLRVSELLDLRISNLYADAGFLKISG-KGEKERLVPIGRDALKHIQLYRDGIR 198

Query: 221 --YNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLR 278
              N KK  +D LF +     + ++             +  L  +  IQ  K    H+ R
Sbjct: 199 CHLNIKKGNEDILFLNRRGAKMSRVM--------VFTIIKDLTAKAGIQ--KTVSPHTFR 248

Query: 279 HGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQMLQD 323
           H  A  L+  G  +  V+E+LGH S+ TT  Y+H  R   +Q++++
Sbjct: 249 HSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLKQVIKE 294