Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 306 a.a., Tyrosine recombinase XerD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 24/175 (13%)

Query: 158 IRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKC 217
           +RD  ++ +++ +G RVSE++ LK           R+   K ++ER V       + L+ 
Sbjct: 138 LRDRCMLELIYASGLRVSELVTLKTWHVGMNEHVLRITG-KGNKERLVPFGQLAGQWLQ- 195

Query: 218 LASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVV--- 274
                       YL Q+  +   G+ ++   +T    RA + +      Q  K+Y     
Sbjct: 196 -----------RYLGQARVEILNGQQSEDLFVTSRGARAGEAMTRAMFWQLVKKYAAQAG 244

Query: 275 -------HSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQML 321
                  H+LRH  A  LLN G  +  V+ +LGH  + TT  Y+H +R+R + ++
Sbjct: 245 ITSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKSIV 299