Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 305 a.a., Tyrosine recombinase XerD from Methylophilus sp. DMC18

 Score = 63.5 bits (153), Expect = 6e-15
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 44/299 (14%)

Query: 37  DGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYL-EKERKISKNTQNRY 95
           DG+  NT+      L  F E+ +Q        L++        YL  +  ++   + NR 
Sbjct: 28  DGLSPNTLSSYRNDLKGFAEWCRQHTHT----LWEVQSHDVQAYLAHRFPQVKVRSINRL 83

Query: 96  FNLLKVFYR------AFKLDNFMDFRDESNER---KRFSSSRIEVKHYDAITEQDLNLVI 146
              L+ FYR        + D  +        R   K  S S++E    D +   D+N+ +
Sbjct: 84  IATLRRFYRYALAANLIQQDPTLHIEAPKMPRSLPKTLSESQVE----DLLNAPDVNVPL 139

Query: 147 AKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVV 206
                      +RD  ++ +L+ +G RVSE++N+K  +   ++G  R+   K  + R V 
Sbjct: 140 G----------MRDRAMLELLYASGLRVSELVNIKISEVSTQDGVVRVTG-KGSKTRLVP 188

Query: 207 CSSDTLELL-KCLASYN---FKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKE 262
              +  E + + LAS      K    D +F +T  + + + A        F   + +   
Sbjct: 189 MGQEAAEWIDRYLASARAEILKGSLSDAVFVTTRGDAMTRHA--------FWHIIQRYAL 240

Query: 263 EEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQM 320
           +  I Q+     H LRH  A  LLN G  + VV+ +LGH  + TT  Y+H +R+R +Q+
Sbjct: 241 QAGISQH--ISPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLQQL 297