Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

 Score =  326 bits (835), Expect = 5e-94
 Identities = 172/328 (52%), Positives = 224/328 (68%), Gaps = 4/328 (1%)

Query: 1   MDVVSKFLVGAGKRDAVTKTPAMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQ 60
           M+ + K L+   K D    T   N +I  F+EEREFD IK +TI  D+T L VFL F ++
Sbjct: 1   MNELEKKLLYGTKSDPAVTTEEQNIYIKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCEE 60

Query: 61  RLEKEPDELYKTDFIKFFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNE 120
            + KEP  L   DF+ FFN L   R  +  TQNRYFNLLKVFYR  K  NF +F  ES E
Sbjct: 61  -IGKEPYSLTTHDFVIFFNMLNNRRNCTVRTQNRYFNLLKVFYRLLKYVNFKEFERESIE 119

Query: 121 RKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNL 180
           RKRFS  + E KHYD I     N +I +I  + S T++RD +++R+LW+TG R SE L++
Sbjct: 120 RKRFS--KFEKKHYDTINFDTYNRIIKEIILSNSRTRLRDALIVRVLWETGCRRSEALSI 177

Query: 181 KYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENL 240
           +Y+DCDFE G FR+R+TK++EER VV + +T+E+++     N K++  DY+FQ+   +N 
Sbjct: 178 RYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYIKENIKRDSNDYIFQNEMIQN- 236

Query: 241 GKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILG 300
           GK    + IT  F +AV KLKEE  I + KR V+HSLRHGRA DLL+KGVPIDVVKEILG
Sbjct: 237 GKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILG 296

Query: 301 HRSLETTLYYSHSRQRKEQMLQDIKKLL 328
           HRSLETTLYYSHS++RK  ML +I+KLL
Sbjct: 297 HRSLETTLYYSHSKERKNGMLDNIQKLL 324