Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 314 a.a., tyrosine recombinase XerC from Magnetospirillum magneticum AMB-1

 Score = 46.6 bits (109), Expect = 8e-10
 Identities = 72/303 (23%), Positives = 117/303 (38%), Gaps = 38/303 (12%)

Query: 22  AMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPD-----ELYKTDFIK 76
           A+  W      ER       +T+ G    L  FL F  + L  EPD      L   DF  
Sbjct: 17  AVESWWQWLGSERR---ASSHTLDGYGRDLAAFLTFLTEHLAAEPDLAALASLGAGDFRA 73

Query: 77  FFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRD--ESNERKRFSSSRIEVKHY 134
           F     ++  + +++  R  + L+ F++      F+D  D   +   K   S R      
Sbjct: 74  FLARRTQDG-LGRSSLARLMSTLRGFFK------FLDRHDLVHNPALKAVKSPRPPKSVP 126

Query: 135 DAITEQDLNLVIAKIFE--NQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEF 192
             +   +    ++   E  ++     RD+ +  +L+  G R+ E L+L   D     G+ 
Sbjct: 127 KPLAPDEALEALSSAGELHDEPWLAARDVALFTLLYGAGLRLGEALSLTRRD--LPKGDT 184

Query: 193 RLRNTKSHEERKV----VCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQ 248
            +   K +++R V    V      + LK L    +  EP D +F       L     + Q
Sbjct: 185 MVITGKGNKQRVVPVLPVVRDAIADYLKRLP---YPAEPTDPIFLGARGGPLNPGVVQRQ 241

Query: 249 ITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTL 308
           + R   R +  L E            H+LRH  A  LL  G  +  ++E+LGH SL TT 
Sbjct: 242 MRRL--RQMMGLPETA--------TPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQ 291

Query: 309 YYS 311
            Y+
Sbjct: 292 RYT 294