Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 262 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

 Score = 46.6 bits (109), Expect = 7e-10
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 43/186 (23%)

Query: 164 IRMLWDTGARVSEVLNLKYEDCDFENGEFRL--RNTKSHEERKVVCSSDTLELLKCLASY 221
           IR+L  TGAR  EV   ++ED D + G +     +TK ++E     S   ++LLK     
Sbjct: 58  IRLLILTGARKGEVFTARWEDIDLDAGIWSKPSAHTKQNQEHIAPLSGTAIQLLKR---- 113

Query: 222 NFKKEPK--DYLFQS--TNQENLGKI-----ADRNQITRTFGR----------------- 255
             +KE     ++F    ++ E++  +     A R   T    R                 
Sbjct: 114 --RKETAAGQWVFPGRVSSDEHITDVKKTWDACRKAATLALWRESPSIAAIIDGLHADLK 171

Query: 256 ---------AVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLET 306
                    A  K + E+  + +    +H LRH  A  L +K VP+ VV  +LGH   +T
Sbjct: 172 RAPTIEEIQAATKPQNEDLPKGSLDLRIHDLRHTYASMLASKKVPLQVVGALLGHTQAQT 231

Query: 307 TLYYSH 312
           TL Y+H
Sbjct: 232 TLRYAH 237