Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 300 a.a., Tyrosine recombinase XerC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 54.3 bits (129), Expect = 4e-12
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 24/192 (12%)

Query: 123 RFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKY 182
           R     I+V   + + + DLN  +A          +RD  ++ +++  G R+SE++ L  
Sbjct: 110 RHLPKNIDVDDVNRLLDIDLNDPLA----------VRDRAMLEVMYGAGLRLSELVGLDI 159

Query: 183 EDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGK 242
           +  D + GE  +    S E R  +  +    +   L         ++ LF S     LGK
Sbjct: 160 KHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGLFASDEEALFLS----KLGK 215

Query: 243 IADRNQITRTFGRAVDKLKEEEKIQQ--NKRYVVHSLRHGRAVDLLNKGVPIDVVKEILG 300
                   R   R V K   E  I+Q  N     H LRH  A  +L     +  V+E+LG
Sbjct: 216 --------RISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLG 267

Query: 301 HRSLETTLYYSH 312
           H +L TT  Y+H
Sbjct: 268 HANLSTTQIYTH 279