Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., site-specific tyrosine recombinase XerC (NCBI) from Escherichia coli BW25113

 Score = 57.0 bits (136), Expect = 6e-13
 Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 37/243 (15%)

Query: 85  RKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERK-------------RFSSSRIEV 131
           R  +  ++ +      +  R   L +F D+    NE K             R     I+V
Sbjct: 57  RNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116

Query: 132 KHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGE 191
              + + + D+N  +A          +RD  ++ +++  G R+SE++ L  +  D E+GE
Sbjct: 117 DDMNRLLDIDINDPLA----------VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGE 166

Query: 192 FRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITR 251
             +    S E R  +  +    +   L   +      D LF S     LGK        R
Sbjct: 167 VWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLS----KLGK--------R 214

Query: 252 TFGRAVDKLKEEEKIQQ--NKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLY 309
              R V K   E  I+Q  N     H LRH  A  +L     +  V+E+LGH +L TT  
Sbjct: 215 ISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQI 274

Query: 310 YSH 312
           Y+H
Sbjct: 275 YTH 277