Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., site-specific tyrosine recombinase XerD (NCBI) from Escherichia coli BW25113

 Score = 60.1 bits (144), Expect = 7e-14
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 157 KIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLK 216
           ++RD  ++ +L+ TG RVSE++ L   D     G  R+   K ++ER V    + +  L+
Sbjct: 132 ELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG-KGNKERLVPLGEEAVYWLE 190

Query: 217 CLASYNFKKEPKDYLFQSTNQENLGKIADRNQITR-TFGRAVDKLKEEEKIQQNKRYVVH 275
                 + +  + +L    + + L       Q+TR TF   +        I   K    H
Sbjct: 191 -----TYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK-LSPH 244

Query: 276 SLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQMLQ 322
            LRH  A  LLN G  + VV+ +LGH  L TT  Y+H + +R  Q+ Q
Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292