Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 295 a.a., tyrosine recombinase XerD from Kangiella aquimarina DSM 16071

 Score = 69.7 bits (169), Expect = 8e-17
 Identities = 59/273 (21%), Positives = 132/273 (48%), Gaps = 23/273 (8%)

Query: 55  LEFAQQRLEKEPDELYKTDFIKFFNYLEKE--RKISKNTQNRYFNLLKVFYRAFKLDNFM 112
           L+   Q L+K+   L  +       YL +   ++ S  +  R+ +  + FYR     N +
Sbjct: 31  LKLFNQWLQKQGKTLTNSGASDIQQYLAERYSKQYSSRSTARFLSSARKFYRYLLQSNHI 90

Query: 113 DFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGA 172
               + +  ++  S +I+     +++E +++ ++++  +  ++  +RD  ++ +L+ +G 
Sbjct: 91  ----KVDPTQQIESPKIQPPVPKSLSEDEVDSLLSQP-DLDTALGLRDKAMLELLYSSGL 145

Query: 173 RVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYN----FKKEPK 228
           R++E+++++     F+ G  R+   K ++ER V    + L+ +     Y      K++  
Sbjct: 146 RITELISVEMNQIGFQQGVMRVIG-KGNKERIVPIGEEALQAIAHYIRYGRAELSKEKVT 204

Query: 229 DYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNK 288
           D+LF ST  + + +        +TF   +    +   I+  K    H+LRH  A  LLN 
Sbjct: 205 DWLFLSTRGQRMTR--------QTFWHRIKFYAKTAGIR--KHLSPHTLRHAFATHLLNH 254

Query: 289 GVPIDVVKEILGHRSLETTLYYSH-SRQRKEQM 320
           G  +  ++ +LGH  L TT  Y++ +++R +Q+
Sbjct: 255 GADLRTLQMLLGHSDLSTTQIYTYVAKERLKQL 287