Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Dickeya dianthicola ME23

 Score = 67.0 bits (162), Expect = 6e-16
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%)

Query: 125 SSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYED 184
           SS ++  +    +TE  ++ ++A    +Q   ++RD  ++ +L+ TG RVSE++ L   D
Sbjct: 102 SSPKLPQRLPKDLTEAQVDALLAAPVTDQP-IELRDKAMLELLYATGLRVSELVGLTISD 160

Query: 185 CDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYN----FKKEPKDYLFQSTNQENL 240
                G  R+   K ++ER V    + +  L+    Y+       +  D LF S   + +
Sbjct: 161 VSLRQGVVRVIG-KGNKERLVPLGEEAVYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQM 219

Query: 241 GKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILG 300
            +        +TF   +        I  NK    H LRH  A  LLN G  + VV+ +LG
Sbjct: 220 TR--------QTFWHRIKHYATLASIDSNK-LSPHVLRHAFATHLLNHGADLRVVQMLLG 270

Query: 301 HRSLETTLYYSHSRQRKEQML 321
           H  L TT  Y+H    + ++L
Sbjct: 271 HSDLSTTQIYTHVATERLRLL 291