Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 327 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 50.8 bits (120), Expect = 4e-11
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 18/161 (11%)

Query: 162 VVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASY 221
           V++R+L+ TG R+ E L+LK ED + E+G  R++++K+ ++R +  S+    + K   SY
Sbjct: 141 VLLRLLYATGIRIGEALDLKDEDVNLEDGYIRIQDSKNKKQRAIPISASLNLVCKEYLSY 200

Query: 222 N----FKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSL 277
                +K     + F + +    G      Q  R + R   +      + +     +H L
Sbjct: 201 RAWLPYKNSTTGFFFVNVSGNKCG------QGFRKWFRKCLEHANIPYLGEKHGPRIHDL 254

Query: 278 RHGRAVDLL----NKGV----PIDVVKEILGHRSLETTLYY 310
           RH  AV+ L      G+     + ++   LGH+S+  T +Y
Sbjct: 255 RHTFAVNSLAGMAEAGIDLYASLPILSNYLGHQSIGATDHY 295