Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 369 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 78.2 bits (191), Expect = 3e-19
 Identities = 77/290 (26%), Positives = 126/290 (43%), Gaps = 33/290 (11%)

Query: 25  KWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEP-DELYKTDFIKFFNYLEK 83
           K I  F++  +     E+T++     L +F  F    LE +P  E+   D  KF      
Sbjct: 95  KEIEAFQDWMKNKRYSESTVMTYRGSLEIFFRF----LENKPLSEIKNEDLEKFTKDFII 150

Query: 84  ERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLN 143
           +R+ S + Q++  N +K+F+   K +  +D    S  RK      +  K           
Sbjct: 151 DRQYSVSYQSQVINAIKLFFN-IKQNRKLDPEVVSRPRKPSKLPNVLSKEE--------- 200

Query: 144 LVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEER 203
             + +I E   + K R ++ I  ++  G R SEVL+LK  D D + G   +R +K  ++R
Sbjct: 201 --VKRILEAHKNIKHRTMLSI--IYACGLRRSEVLHLKISDVDSKRGLLIVRQSKGKKDR 256

Query: 204 KVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRT-FGRAVDKLKE 262
            V  S  T+ LL+    Y   + P+ +LF      +        +I ++  G++  K   
Sbjct: 257 VVPLSDKTIALLREYYKY---ERPQYFLFXGKKLNSKYSSGSLQKILKSALGKSGIK--- 310

Query: 263 EEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312
                  K   +H LRH  A  LL  G  +  ++EILGH S  TT  Y+H
Sbjct: 311 -------KPVTLHWLRHSFATHLLENGTDLRYIQEILGHNSSRTTEIYTH 353