Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 301 a.a., tyrosine recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 60.1 bits (144), Expect = 7e-14
 Identities = 60/247 (24%), Positives = 111/247 (44%), Gaps = 30/247 (12%)

Query: 87  ISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRF--SSSRIEVKHYDAITEQDLNL 144
           IS+ TQ R  + +K F++      FM + D+  E       + ++  K  D ++ +++  
Sbjct: 70  ISEYTQARVISGVKAFFK------FMVYEDKLEEDPAILLEAPKLGRKLPDTLSYEEIVK 123

Query: 145 VIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERK 204
           ++  I +  +    R+  ++ +L+ +G RVSE++ LK      + G  R+   K ++ER 
Sbjct: 124 LLEGI-KLGTPEGHRNRAMLEVLYSSGLRVSELVELKLGMVYSDIGFLRILG-KGNKERL 181

Query: 205 VVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKL---- 260
           V    D L  LK             YL +  N + +    +        G+ + ++    
Sbjct: 182 VPVGKDALRYLKL------------YLDEVRNHQKIAPGHEEYVFLNRRGKKMTRVMVFI 229

Query: 261 ---KEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQR 316
              K  E++   K+   H+ RH  A  L+  G  +  V+E+LGH S+ TT  Y+H  R+ 
Sbjct: 230 FIKKLVEEVGIKKKVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDREY 289

Query: 317 KEQMLQD 323
             Q+L D
Sbjct: 290 LRQVLTD 296