Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 294 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 70.1 bits (170), Expect = 6e-17
 Identities = 61/242 (25%), Positives = 121/242 (50%), Gaps = 15/242 (6%)

Query: 84  ERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLN 143
           E+ +S  T NR    L+ FY+ F L +    +D + + +   +S+   K  + + E  ++
Sbjct: 60  EQGLSATTVNRKMATLRSFYK-FLLRSGEITKDPTYKLRALKTSK---KLPEFVQESTMD 115

Query: 144 LVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEER 203
            ++  +         RD +V+  L+ TG R+SE++ L ++D D +    ++   +  +++
Sbjct: 116 QLLNDLEYEAGFEGQRDKMVMEFLYLTGVRLSELIGLTWKDIDIQGKTVKVYGKR--KKQ 173

Query: 204 KVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQEN--LGKIADRNQITRTFGRAVDKLK 261
           +++  ++TL  ++ + SY  KK+ K+  F + N+ +  +  I+ +        R V K  
Sbjct: 174 RIIPLTNTL--IENIISY--KKDFKE-TFSNVNESDYFIVTISKKQAYPMIIYRIVRKYL 228

Query: 262 EEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQML 321
           +     Q  +   H LRH  A  LLNKG  ++ VK++LGH +L  T  Y+H+   K + +
Sbjct: 229 D--LFAQTSKRSPHLLRHTFATHLLNKGADLNAVKDLLGHANLAATQVYTHNSMEKLKAV 286

Query: 322 QD 323
            D
Sbjct: 287 FD 288