Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 422 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 62.8 bits (151), Expect = 1e-14
 Identities = 59/290 (20%), Positives = 122/290 (42%), Gaps = 14/290 (4%)

Query: 23  MNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYLE 82
           + K I  F   R+  G+  +++      L  F+E+ ++R       +     + F N   
Sbjct: 113 IGKVILDFLRRRQQRGMSRSSLHNYQRHLYEFMEYCEKRGIGSVGYIDLPLLLHFINQYN 172

Query: 83  KERKISKNTQNRYFNLLKVFYRAFKLDNF--MDFRDESNERKRFSSSRIEVKHYDAITEQ 140
            ++K          + L++F R    +N   +D+  +    K+ +  +I   +    +++
Sbjct: 173 CDKK---TVMIVLISTLRIFLRYLFKENLTAIDYSSKVPRCKKVTQPKIPSLY----SKE 225

Query: 141 DLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSH 200
           ++  +IA + +  S T  R+  +I +    G R S++  LK+++  +      +   K+ 
Sbjct: 226 EVEKLIASV-DRSSPTGKRNYAIIMLAARLGLRASDISRLKFKNLHWNTSTIEIDQVKTG 284

Query: 201 EERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKL 260
              ++    D    +     Y      + ++F  T +   G     N +T    RA+ K 
Sbjct: 285 NPLQLPLLPDVGNAIIDYLQYGRPVSEEPHVFL-TGRPPYGCFTTSNVVTHVVQRAIIKA 343

Query: 261 KEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYY 310
             + K   N+R+  HSLRH     +L K   + V+ E+ GH+S E+T +Y
Sbjct: 344 GIDTK---NRRFGPHSLRHSLGFRMLEKSTMLPVISEVFGHKSSESTRFY 390