Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 315 a.a., site-specific recombinase from Agrobacterium fabrum C58

 Score = 44.7 bits (104), Expect = 3e-09
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 18/157 (11%)

Query: 159 RDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVV----CSSDTLEL 214
           R+  V+ +L+  G R+SE L L     DF  G   LR T    + ++V      ++ ++ 
Sbjct: 155 RNAAVLSLLYGCGLRISEALGLT--PADFPPGTRSLRITGKGNKTRIVPLLAVVTEAVDT 212

Query: 215 LKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVV 274
            + L  Y    +   +L         GK+           R + KL+    + +N     
Sbjct: 213 YRKLCPYALAADEPMFLGARG-----GKLQPA-----IIQREMQKLRGAFGLPENA--TP 260

Query: 275 HSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYS 311
           H+LRH  A  LL  G  +  ++E+LGH SL TT  Y+
Sbjct: 261 HALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT 297