Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 532 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  284 bits (727), Expect = 5e-81
 Identities = 161/374 (43%), Positives = 222/374 (59%), Gaps = 7/374 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF  LGLSD++L A+   G+T PTPIQ QAIP ++  +RD++G AQTGTGKTAAF +P+L
Sbjct: 2   SFSELGLSDKVLAAVADTGYTTPTPIQAQAIPHVL-ARRDVLGLAQTGTGKTAAFTLPML 60

Query: 63  ETIDE---HSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELR 119
             +++    +R  + LIL PTRELA QV E         +LNV  + GG S   Q  +L 
Sbjct: 61  TLLEQGRARARMPRTLILEPTRELAAQVEENFTRYGKYSKLNVALLIGGVSFGDQDTKLV 120

Query: 120 RGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRM 179
           RGV +++ TPGR+LDH+ R  + L  +  +V+DEAD ML+MGFI D+E I K V   ++ 
Sbjct: 121 RGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 180 LLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRD--KFELLSRII- 236
           L FSAT+P  I +L   ++     ++V +   T T   Q        D  K E+L  +I 
Sbjct: 181 LFFSATMPPEIQRLVSQFLSSPVRVEVSKPASTATTVTQELVASGREDYEKREVLRELIR 240

Query: 237 DTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLV 296
             E    G+IFC  K DV  +   L + G+ A  LHGDM Q  R K LD+F+  +  +LV
Sbjct: 241 SCENLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDEFRNGEATLLV 300

Query: 297 ATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYI 356
           A+DVAARG+DI  ++HV N+D+P + E YVHRIGRTGRAG+ G A T V   + +    I
Sbjct: 301 ASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRAGTAYTMVTHLDAKSLSAI 360

Query: 357 QKIAKTEIKREEVP 370
           +K+    I     P
Sbjct: 361 EKLIGNPIPWHGAP 374