Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 557 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  345 bits (885), Expect = 3e-99
 Identities = 207/543 (38%), Positives = 317/543 (58%), Gaps = 28/543 (5%)

Query: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
           F    L+  IL A+   G+  P+ IQ+Q+IPI++ GK D++GQAQTGTGKTAAF +PIL 
Sbjct: 8   FAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGK-DMIGQAQTGTGKTAAFALPILH 66

Query: 64  TIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRGV 122
            ID   R  QALILAPTRELA+QVA   ++  K    + V  VYGG  +  Q++ +R G 
Sbjct: 67  CIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGA 126

Query: 123 QIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLLF 182
           QIVV TPGR+ DH+ R    L  V+++VLDEADEML +GF+DD+E I K++   ++ +LF
Sbjct: 127 QIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTVLF 186

Query: 183 SATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKEF 242
           SATLP SI  +A+ ++R+ + +K++ +  T T  +Q+   +H+  K   +  +++ E   
Sbjct: 187 SATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246

Query: 243 YGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVAA 302
             ++F +TK    ++A+ L  KGY A  L+GD+ Q QRE+ +D  K  +++++VATDVAA
Sbjct: 247 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306

Query: 303 RGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAKT 362
           RG+D+  +THV N D+P +PESYVHRIGRTGRAG++G A+  V P E R  + I+++   
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQ 366

Query: 363 EIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLE------DADPQEVL 416
           ++    +PD + ++ A+  K+ + +  ++     AD E    DLL+         P+ + 
Sbjct: 367 KVAEVRLPDAQAVLDARIKKLTNSLSPLV-----ADAESTHGDLLDRLTADIGCTPRALA 421

Query: 417 SAVLKYALKDE-LSESNYKK--------IGRGSQRSERSGRNDSRG---RRSFAP--GEN 462
           +A+L+ A   + L+ +  +K          RG  R ERSG    RG   RR+  P     
Sbjct: 422 AALLRKATNGQALTLAAIEKERPLVPNSAPRG-DRPERSGDRPDRGDRERRAPVPLAEGR 480

Query: 463 VRLFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFK 522
            R   ALG  D +  K L+  I  +  +    I  ++V + FS V +     E +L   K
Sbjct: 481 ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK 540

Query: 523 NER 525
           + R
Sbjct: 541 DTR 543