Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 463 a.a., ATP-dependent RNA helicase Atu1833 from Sphingobium sp. HT1-2

 Score =  293 bits (750), Expect = 1e-83
 Identities = 161/372 (43%), Positives = 231/372 (62%), Gaps = 6/372 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F +LGLSDE+L+A+ + G+  PTPIQ QAIP ++  K DI+G AQTGTGKTA+F +P++
Sbjct: 2   TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMK-DIIGIAQTGTGKTASFVLPMI 60

Query: 63  ETIDEHSRNT----QALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIREL 118
           + +  H R      ++LIL PTRELA QVAE  +      +L++  + GG  +  QI+ L
Sbjct: 61  DIL-AHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKAL 119

Query: 119 RRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKR 178
            +GV +++ TPGR++D   R  I L   + +V+DEAD ML+MGFI D+EEI   +   ++
Sbjct: 120 EKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQ 179

Query: 179 MLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDT 238
            LLFSAT+P  I KLA  ++     I+V R    +T   Q   ++ SR K E L  +++ 
Sbjct: 180 TLLFSATMPPVIKKLADRFLDNPKSIEVARPATASTNITQRLVKVDSRKKREALRAMLEA 239

Query: 239 EKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVAT 298
           E     +IFC  K  V E+   L   G+ +  +HGD+ QA R   L++F+   +N+LVA+
Sbjct: 240 EDVQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFRDGSVNILVAS 299

Query: 299 DVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQK 358
           DVAARG+DI  ++HV NFD P +P+ YVHRIGRTGRAG +G A TFV   +      IQK
Sbjct: 300 DVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEAIDNIQK 359

Query: 359 IAKTEIKREEVP 370
           +  T+I   E P
Sbjct: 360 LIGTKIDYVETP 371