Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

 Score =  278 bits (712), Expect = 2e-79
 Identities = 147/373 (39%), Positives = 235/373 (63%), Gaps = 3/373 (0%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F  L LS  +L  LE  G+ + TPIQ Q++P++++G+ D++ QA+TG+GKTAAFGI +L
Sbjct: 7   AFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQ-DLIAQAKTGSGKTAAFGIGLL 65

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRG 121
             I+      QAL+L PTRELA QVA+E+  + +    + +  + GG S+  QI  L  G
Sbjct: 66  NPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHG 125

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
             I+VGTPGRI  H+ + T+ L+ ++ +VLDEAD ML+MGF D +  I+    + ++ LL
Sbjct: 126 AHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLL 185

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT P  I +LA ++MR    +KV+    T    +Q F EI  + + E ++R++   + 
Sbjct: 186 FSATYPAGIKQLAADFMRNPQQVKVESLH-TDNQIEQRFIEIDPQQRLEAVTRVLGHYRP 244

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              + FC TK   ++V   L  KG  A+ LHGD+ Q  R++ L  F  +  +VLVATDVA
Sbjct: 245 QSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVA 304

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+DI+ L  V+N ++ ++ E +VHR+GRTGRAG++G A++ V P+E  + + I+ +  
Sbjct: 305 ARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQN 364

Query: 362 TEIKREEVPDVKD 374
           + ++ +++  +K+
Sbjct: 365 SPLRWDQLDSLKN 377



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 12/51 (23%), Positives = 29/51 (56%)

Query: 465 LFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAE 515
           L +A G+ DK+ P  ++  ++  + + G+ +  + +F+  +FV V  + A+
Sbjct: 390 LCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVERALAK 440