Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

 Score =  348 bits (893), Expect = e-100
 Identities = 207/542 (38%), Positives = 312/542 (57%), Gaps = 24/542 (4%)

Query: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
           F  L L+  I+ A+   G+  P+ IQ+Q+IPI++ G  D++GQAQTGTGKTAAF +PIL 
Sbjct: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAG-HDMIGQAQTGTGKTAAFALPILN 66

Query: 64  TIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRGV 122
            ID   R  QALILAPTRELA+QVA   ++  K    +NV  VYGG  +  Q+R +R G 
Sbjct: 67  KIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRNGA 126

Query: 123 QIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLLF 182
           QIVV TPGR+ DH+ R    L  V Y+VLDEADEML +GF+DD+E I  ++   ++ +LF
Sbjct: 127 QIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLF 186

Query: 183 SATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKEF 242
           SATLP SI  +A+ ++RE   +K++ +  T T  +Q+   +H+  K   + R+++ E EF
Sbjct: 187 SATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVE-EF 245

Query: 243 YGLI-FCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
             LI F +TK    ++A  L  KGY A  L+GD+ Q QRE+ +D  K  +++++VATDVA
Sbjct: 246 DALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+D+  +THV N D+P +PESYVHRIGRTGRAG+ G A+  V P E R  + I+++  
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTG 365

Query: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCE---KMASDLLEDADPQEVLSA 418
            ++    +P+ + ++ A+  K+ S +  ++   +    E   ++ +DL      + + SA
Sbjct: 366 QKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTTDL--GCSARALASA 423

Query: 419 VLKYALKDELSE-----------SNYKKIGRGSQRSERSGRNDSRGRRSFAP----GENV 463
           +L+ A   +  +            ++   G  ++R ER  R D   R   AP       V
Sbjct: 424 LLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERPDRGDRERRAPLPLAEGRV 483

Query: 464 RLFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFKN 523
           R   ALG  D +  K L+  I  +  +    I  ++V + FS V +     E +L   K+
Sbjct: 484 RCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLKD 543

Query: 524 ER 525
            R
Sbjct: 544 TR 545