Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 444 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas lactucae CFBP13502

 Score =  276 bits (706), Expect = 1e-78
 Identities = 152/374 (40%), Positives = 221/374 (59%), Gaps = 6/374 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F  LGL + +L ALE  G+  PTP+Q QAIP ++ G RD++  AQTGTGKTA F +P+L
Sbjct: 2   TFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAG-RDLMAAAQTGTGKTAGFALPLL 60

Query: 63  ETIDEH-----SRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRE 117
           + +        + + +ALIL PTRELA QV   +        L  + VYGG SI+ Q+ +
Sbjct: 61  QLLTMEGPKVAANSARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMK 120

Query: 118 LRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDK 177
           LR+GV I+V TPGR++D   +  +KL  +  +VLDEAD ML++GF +++  I + +   +
Sbjct: 121 LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180

Query: 178 RMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIID 237
           + LLFSAT  D I  LA   + +   I+V  + +      Q    +  + K EL   ++ 
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKAELFVHLMR 240

Query: 238 TEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVA 297
             +    L+F KT+  VD + ++L   G  A+G+HGD  QA R++ LD+FK  ++ +LVA
Sbjct: 241 KGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVA 300

Query: 298 TDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQ 357
           TDVAARG+DI DL  VVNFD+P   E Y+HRIGRTGRAG  G AI+ V   E      I+
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIE 360

Query: 358 KIAKTEIKREEVPD 371
            + +  + R    D
Sbjct: 361 MLTRQTLTRNMEQD 374