Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 606 a.a., RNA helicase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  427 bits (1099), Expect = e-124
 Identities = 229/536 (42%), Positives = 346/536 (64%), Gaps = 22/536 (4%)

Query: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
           F+ L LS E+  A+   GF   +PIQ +AIP+++ GK DI+GQAQTGTGKTAAFGIP +E
Sbjct: 6   FEELPLSPEVQRAIADMGFEEASPIQTEAIPVVLSGK-DIIGQAQTGTGKTAAFGIPTIE 64

Query: 64  TIDEHSRNTQALILAPTRELAIQVAEEIDSIKGSKR-LNVFPVYGGQSIDRQIRELRRGV 122
           T+D   R+ QALIL PTRELAIQV+ EI  +   K+ ++V P+YGGQS DRQ+R L++GV
Sbjct: 65  TVDPSDRSVQALILCPTRELAIQVSGEIQKLAKYKQGISVVPIYGGQSYDRQLRALKQGV 124

Query: 123 QIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLLF 182
           QIV+GTPGR++DHI R T+ L+NV+ ++LDEADEML+MGF +D+E +L+ +  D++ + F
Sbjct: 125 QIVIGTPGRVMDHIQRGTLVLDNVNKIILDEADEMLDMGFREDIEFVLERIPEDRQTIFF 184

Query: 183 SATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKEF 242
           SAT+   IM++ K Y  +  ++KV  Q+LT T  DQ+++E+ +  K E+LSR++D     
Sbjct: 185 SATMSKPIMEMTKRYQTDPVLVKVVHQELTVTNIDQAYFEVRNSAKQEVLSRLLDMYNLK 244

Query: 243 YGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVAA 302
             +IFC TK  VD++   L  +GY ++ LHGD+ Q QR   ++KF+   + +LVATDVAA
Sbjct: 245 SAIIFCNTKRMVDDLVTGLQARGYFSDALHGDLNQNQRSAVMNKFRNGTLEILVATDVAA 304

Query: 303 RGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFV-EPSEFRKFKYIQKIAK 361
           RG+D+ ++  V N+D+PQ+ ESYVHRIGRTGRAGK G A +FV   S+  K K I +  K
Sbjct: 305 RGLDVENVEAVFNYDLPQDEESYVHRIGRTGRAGKSGKAFSFVGGRSDGYKLKDIMRYTK 364

Query: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLEDAD---PQEVLSA 418
            +I  ++VP ++D+   +       +KEVLE G  A         + + D   P +V SA
Sbjct: 365 AKIVLQQVPSLEDVNEIRTNMFFDKVKEVLEKGHLAKHVARIERFVNETDGYTPLDVASA 424

Query: 419 VLKYALKDELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGENVRLFVALGKLDKMNPK 478
           +LK ++K+               + +  G +  +G  +   G + RLF+ +GK D+++P+
Sbjct: 425 LLKMSMKE--------------AKVKEKGADAEKGLSAAKEGMD-RLFITIGKKDRVHPR 469

Query: 479 KLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSS-DAEIILDSFKNERRGRRSIIE 533
            L+D +++ S +    + D+ +++KFSFV V +   AEI+ +  + E  GR  I+E
Sbjct: 470 DLIDLLAQNSSIPEGRVGDIDLYDKFSFVEVPTEYTAEIVENIGRVEYDGRMVIVE 525