Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  296 bits (757), Expect = 1e-84
 Identities = 164/390 (42%), Positives = 237/390 (60%), Gaps = 7/390 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF +LGL+ +IL A+ ++G+  PTPIQ+QAIP ++EG RD++  AQTGTGKTA F +P+L
Sbjct: 2   SFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEG-RDLMASAQTGTGKTAGFTLPLL 60

Query: 63  ETIDEHS------RNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIR 116
           + +  H       R  +ALIL PTRELA Q+ E +        +    V+GG SI+ Q+ 
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 117 ELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTD 176
           +LR GV ++V TPGR+LD   +  +KL+ +  +VLDEAD ML+MGFI D+  +L  +   
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 177 KRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRII 236
           ++ LLFSAT  D I  LA+  +R    I+V R+   +    Q  + +  + K ELLS++I
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240

Query: 237 DTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLV 296
                   L+F +TK   + +A +LN+ G  +  +HG+ +Q  R + L  FK   I VLV
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 297 ATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYI 356
           ATD+AARG+DI +L HVVN+++P  PE YVHRIGRTGRA   G A++ V   E +  + I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 357 QKIAKTEIKREEVPDVKDIISAKKIKIISG 386
           +K+ K EI R   P  +   S K   I +G
Sbjct: 361 EKLLKKEIPRITTPGYEPDPSIKAEPIQNG 390