Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

 Score =  294 bits (752), Expect = 5e-84
 Identities = 166/390 (42%), Positives = 237/390 (60%), Gaps = 7/390 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF +LGLS +IL A+ ++G+  PTPIQ+QAIP ++EG RD++  AQTGTGKTA F +P+L
Sbjct: 2   SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEG-RDLMASAQTGTGKTAGFTLPLL 60

Query: 63  E---TIDEHS---RNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIR 116
           +   T   H+   R  +ALIL PTRELA Q+ E +        +    V+GG SI+ Q+ 
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 117 ELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTD 176
           +LR GV ++V TPGR+LD   +  +KL+ V  +VLDEAD ML+MGFI D+  +L  +   
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 177 KRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRII 236
           ++ LLFSAT  D I  LA+  +     I+V R+   +    Q  + +  + K ELLS +I
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240

Query: 237 DTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLV 296
                   L+F +TK   + +A +LN+ G  +  +HG+ +Q  R + L  FK   I VLV
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 297 ATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYI 356
           ATD+AARG+DI +L HVVN+++P  PE YVHRIGRTGRA   G A++ V   E +  + I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 357 QKIAKTEIKREEVPDVKDIISAKKIKIISG 386
           +K+ K EI R  +P  +   S K   I +G
Sbjct: 361 EKLLKKEIPRIAIPGYEPDPSIKAEPIQNG 390