Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 597 a.a., ATP-dependent RNA helicase CsdA (EC 5.99.1.-) from Kangiella aquimarina DSM 16071

 Score =  388 bits (997), Expect = e-112
 Identities = 219/540 (40%), Positives = 330/540 (61%), Gaps = 26/540 (4%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF  LGLS  +L+++++ G+  P+PIQ  +IP+L+ GK DI+GQAQTGTGKTAAF +P+L
Sbjct: 9   SFDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMSGK-DIIGQAQTGTGKTAAFALPML 67

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRG 121
             +D    NTQ L+LAPTRELAIQVAE   S  K    +NV P+YGGQ  D Q+R+L+RG
Sbjct: 68  SKLDAKDSNTQLLVLAPTRELAIQVAEACQSYAKNMPGMNVLPIYGGQRYDTQLRQLKRG 127

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
            QIVVGTPGR++DHI R T+ L+N+  +VLDEADEML MGFI+DVE +L      +++ L
Sbjct: 128 AQIVVGTPGRVMDHIRRGTLNLDNLKALVLDEADEMLRMGFIEDVEWVLGHTPDTRQIAL 187

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT+P  I K+A+ Y+ E + IK++ +  T T  DQ ++ +    K + L+R+++TE E
Sbjct: 188 FSATMPKEIKKVAEKYLNEPEHIKIQSKTSTATTIDQRYWLVSGLHKLDALTRVLETE-E 246

Query: 242 FYGLI-FCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDV 300
           F G+I F +TK    E+A++L  +G+ AE L+GD+ Q  RE+ ++K K  + ++L+ATDV
Sbjct: 247 FDGMIIFVRTKIATIELADKLTARGFRAEALNGDIAQNARERIVEKLKKGQSDILIATDV 306

Query: 301 AARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIA 360
           AARG+D+  ++HVVN+DIP + ESYVHRIGRTGRAG+ G+AI FV   E R  K I++  
Sbjct: 307 AARGLDVERISHVVNYDIPYDTESYVHRIGRTGRAGRSGHAILFVAHRERRMLKAIERAT 366

Query: 361 KTEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDL--LEDADPQEVLSA 418
              I   ++P +++I   +  +    +   +E+      ++    L    D +P+ + +A
Sbjct: 367 NQPITEMQMPSIENINEQRMSRFERKVLSTIETDDLNFFKQFVQKLEAKTDCEPETIAAA 426

Query: 419 VLKYALKDELSESNYKKIGR-GSQRSERSGRNDSRGR---------RSFAPG-------- 460
           + K A  DEL      K+ +  S R ER  R D + R         RSF+P         
Sbjct: 427 LAKLAGGDELILKEMPKVKKERSDRPERGERRDRKSRDEGSKRGSDRSFSPYAQPLKAHP 486

Query: 461 --ENVRLFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIIL 518
             E  R  +  G    +    +V  I+ ++++    I  + +F++F+ V + S   + +L
Sbjct: 487 DIEMERFKIDAGHSHNVKVSNIVGAIANEAELDSEYIGRIDIFDEFTTVDLPSGMPKEVL 546