Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 638 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Erwinia amylovora T8

 Score =  354 bits (908), Expect = e-102
 Identities = 203/549 (36%), Positives = 318/549 (57%), Gaps = 28/549 (5%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F +LGL+ ++LE+L   G+  P+PIQ + IP L+ G RD++G AQTG+GKTAAF +P+L
Sbjct: 7   TFADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAG-RDVLGMAQTGSGKTAAFSLPLL 65

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRG 121
             ID   +  Q L+LAPTRELA+QVAE +    K  + LNV  +YGGQ  D Q+R LR+G
Sbjct: 66  HNIDPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQG 125

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
            Q+VVGTPGR+LDH+ R T+ L N+  +VLDEADEML MGFI+DVE I+  +    +  L
Sbjct: 126 PQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTAL 185

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT+P++I ++ K +M++   ++++    T     QS++  + R K + L+R ++ E  
Sbjct: 186 FSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGR-KTDALTRFLEAEDF 244

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              +IF +TK    EVA  L   GY +  L+GDM QA RE+TL++ K  ++++L+ATDVA
Sbjct: 245 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 304

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+D+  ++ VVN+DIP + ESYVHRIGRTGRAG+ G A+ FVE  E R  + I++  K
Sbjct: 305 ARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 364

Query: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLL--EDADPQEVLSAV 419
             I   E+P+ + +   +  K  + +++ LES        + S +   ++ D + + +A+
Sbjct: 365 LTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLEQYRALLSKMQPEDELDIETLAAAL 424

Query: 420 LKYA----------------------LKDELSESNYKKIGRGSQRSERSGRNDSRGRRSF 457
           LK A                        D   +    +  RG + +    R   R RR  
Sbjct: 425 LKMAQGERPLIVPADAPQRPRREFRDRDDRRDDRRGDRPDRGPREARGEAREGDRPRRER 484

Query: 458 APGENVRLF-VALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEI 516
               ++ ++ + +G+ D +  + +V  I+ + D+  R I ++K+F   S + +       
Sbjct: 485 RDVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGD 544

Query: 517 ILDSFKNER 525
           +L  F   R
Sbjct: 545 VLQHFTRTR 553