Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 619 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Erwinia tracheiphila SCR3

 Score =  358 bits (918), Expect = e-103
 Identities = 209/536 (38%), Positives = 313/536 (58%), Gaps = 17/536 (3%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F +LGL+ +ILE+L   G+  P+PIQ + IP L+ G RD++G AQTG+GKTAAF +P+L
Sbjct: 7   TFSDLGLNADILESLNGMGYVKPSPIQAECIPHLLAG-RDVLGMAQTGSGKTAAFSLPLL 65

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRG 121
             ID   +  Q L+LAPTRELA+QVAE +    K  + L+V  +YGGQ  D Q+R LR+G
Sbjct: 66  NNIDAGVKAPQILVLAPTRELAVQVAEAVTGFSKHMRGLSVVALYGGQRYDVQLRALRQG 125

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
            Q+VVGTPGR+LDH+ R T+ L N+  +VLDEADEML MGFI+DVE I+  +    +  L
Sbjct: 126 PQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT+P++I ++ K +M++   ++++    T     QS++  + R K + L R ++ E  
Sbjct: 186 FSATMPEAIRRITKRFMKDPQEVRIQSSITTRPDISQSYWTAYGR-KTDALVRFLEAEDF 244

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              +IF +TK    EVA  L   GY +  L+GDM QA RE+TL++ K  ++++L+ATDVA
Sbjct: 245 DAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 304

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+D+  ++ VVNFDIP + ESYVHRIGRTGRAG+ G A+ FVE  E R  + I++  K
Sbjct: 305 ARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 364

Query: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDL--LEDADPQEVLSAV 419
             I   E+P+ + +   +  K    +++ LES        + S +   E+ D + + +A+
Sbjct: 365 LTIPEVELPNAELLGQRRLAKFAEKVQQQLESSDLGQYRALLSKMHPEEELDIETLAAAL 424

Query: 420 LKYALKDE----------LSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGENVRLFVAL 469
           LK A  +                +K+      R  R G    R RR     E  R+ V  
Sbjct: 425 LKMAQGERPLIVPADPAPRPRREFKERDDHGPRENRDGDRPRRERRDVGDMEVYRIDV-- 482

Query: 470 GKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFKNER 525
           G+ D +  + +V  I+ + D+  R I ++K+F   S + +       IL  F   R
Sbjct: 483 GRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDILQHFTRTR 538