Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 631 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  359 bits (922), Expect = e-103
 Identities = 211/555 (38%), Positives = 325/555 (58%), Gaps = 34/555 (6%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F +LGL   ILEAL   G+  P+PIQ + IP L+ G RD++G AQTG+GKTAAF +P+L
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSG-RDVLGMAQTGSGKTAAFSLPLL 65

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRG 121
             ID   R  Q L+LAPTRELA+QVAE +    K  + +NV  +YGGQ  D Q+R LR+G
Sbjct: 66  NNIDPDLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQG 125

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
            QIVVGTPGR+LDH+ R T+ L  +S +VLDEADEML MGFI+DVE I+  +    +  L
Sbjct: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTAL 185

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT+P++I ++ K +M++   ++++    T     QS++ ++   K E L R ++ E  
Sbjct: 186 FSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDF 245

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              +IF +TK    EVA  L   GY +  L+GDM QA RE+TL++ K  ++++L+ATDVA
Sbjct: 246 DAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+D+  ++ VVN+DIP + ESYVHRIGRTGRAG+ G A+ FVE  E R  + I++  K
Sbjct: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365

Query: 362 TEIKREEVPDVKDIISAKKI-KIISGIKEVLES------------------GKYADCEKM 402
             I   ++P+  D++  +++ K  + +++ LES                  G+  D E +
Sbjct: 366 LTIPEADLPNA-DLLGKRRLEKFAAKVQQQLESSDLDQYRALLSQIQPVAEGEELDMETL 424

Query: 403 ASDLLEDADPQEVL----SAVLKYALKDELSESNYKKIGRGSQRSERSGRND-------S 451
           A+ LL+ A  +  L     A ++   +    +  +++ G  + R++R  R D        
Sbjct: 425 AAALLKMAQGERSLIVPPDAPMRPKREFRDRDDRFERRGDRNDRNDRGPRGDRPERGGED 484

Query: 452 RGRRSFAPGENVRLF-VALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVS 510
           R RR      ++ L+ + +G+ D +  + +V  I+ + D+  R I ++K+F   S + + 
Sbjct: 485 RPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 544

Query: 511 SSDAEIILDSFKNER 525
                 +L  F   R
Sbjct: 545 KGMPGEVLQHFTRTR 559