Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 461 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  293 bits (751), Expect = 7e-84
 Identities = 161/388 (41%), Positives = 239/388 (61%), Gaps = 9/388 (2%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF +LGL+ EIL A+ ++G+  PTPIQ+QAIP +++G RD++  AQTGTGKTA F +P+L
Sbjct: 2   SFDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQG-RDLMASAQTGTGKTAGFTLPLL 60

Query: 63  ETIDEHS------RNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIR 116
           E + ++       R  +ALIL PTRELA Q+ E +        +    V+GG SI+ Q+ 
Sbjct: 61  ELLVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMM 120

Query: 117 ELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTD 176
           +LR GV +++ TPGR+LD   +  +KL+ +  +VLDEAD ML+MGFI D+  +L  +   
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDGIEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 177 KRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRII 236
           ++ LLFSAT  D I  LA+  +     ++V R+   +    Q  + +  + K ELLS++I
Sbjct: 181 RQNLLFSATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240

Query: 237 DTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLV 296
                   L+F +TK   + +A +LN+ G  +  +HG+ +Q  R + L  FK   I VLV
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 297 ATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYI 356
           ATD+AARG+DI +L HVVN+++P  PE YVHRIGRTGRA   G A++ V   E +  + I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 357 QKIAKTEIKREEVP--DVKDIISAKKIK 382
           +++ K EI R E P  +V   I A+ I+
Sbjct: 361 ERLLKKEIPRIETPGYEVDPSIKAEPIQ 388