Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli ECRC98

 Score =  356 bits (914), Expect = e-102
 Identities = 207/544 (38%), Positives = 314/544 (57%), Gaps = 22/544 (4%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F +LGL   ILEAL   G+  P+PIQ + IP L+ G RD++G AQTG+GKTAAF +P+L
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLL 65

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEI-DSIKGSKRLNVFPVYGGQSIDRQIRELRRG 121
           + +D   +  Q L+LAPTRELA+QVAE + D  K  + +NV  +YGGQ  D Q+R LR+G
Sbjct: 66  QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
            QIVVGTPGR+LDH+ R T+ L  +S +VLDEADEML MGFI+DVE I+  +    +  L
Sbjct: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT+P++I ++ + +M+E   ++++    T     QS++ +    K E L R ++ E  
Sbjct: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              +IF +TK    EVA  L   GY +  L+GDM QA RE+TL++ K  ++++L+ATDVA
Sbjct: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+D+  ++ VVN+DIP + ESYVHRIGRTGRAG+ G A+ FVE  E R  + I++  K
Sbjct: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365

Query: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLL-----EDADPQEVL 416
             I   E+P+ + +   +  K  + +++ LES        + S +      E+ D + + 
Sbjct: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425

Query: 417 SAVLKYAL---------------KDELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGE 461
           +A+LK A                K E  + + +     + R  R  R D   R     G+
Sbjct: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485

Query: 462 NVRLFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSF 521
                + +G+ D +  + +V  I+ + D+  R I ++K+F   S + +       +L  F
Sbjct: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545

Query: 522 KNER 525
              R
Sbjct: 546 TRTR 549