Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 628 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Dickeya dianthicola ME23

 Score =  355 bits (910), Expect = e-102
 Identities = 205/545 (37%), Positives = 318/545 (58%), Gaps = 23/545 (4%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF +LGLS  IL AL + G+  P+PIQ + IP L+ G RD++G AQTG+GKTAAF +P+L
Sbjct: 7   SFASLGLSAPILSALSELGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLL 65

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRG 121
             I    +  Q L+LAPTRELA+QVAE  +   K  + +NV  +YGGQ  D Q+R LR+G
Sbjct: 66  NNIKAELKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQG 125

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
            QIVVGTPGR+LDH+ R T+ L N+S +VLDEADEML MGFI+DVE I+  +  + +  L
Sbjct: 126 PQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTAL 185

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT+P++I ++ + +M++   ++++    T     QS++ ++   K E L R ++ E  
Sbjct: 186 FSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDF 245

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              +IF +TK    EVA  L   GY +  L+GDM QA RE+TL++ K  ++++L+ATDVA
Sbjct: 246 DAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+D+  ++ VVN+DIP + ESYVHRIGRTGRAG+ G A+ FVE  E R  + I++  K
Sbjct: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365

Query: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLESG---------------KYADCEKMASDL 406
             I   ++P+ + +   +  +  + +++ LES                +  D E +A+ L
Sbjct: 366 LTIPEVDLPNAELLGQRRLAQFAAKVQQQLESSDLDMYRALLGKLRPQEELDIETLAAAL 425

Query: 407 LEDADPQEVL------SAVLKYALKDELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPG 460
           L+ A  +  L      +A  +   +    +  +++ G  ++R+ RS       R     G
Sbjct: 426 LKMAQGERPLVLPPESAAERRPRREFRERDERFERRGDRNERAPRSSDERPARRERRDVG 485

Query: 461 ENVRLFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDS 520
           E     + +G+ D +  + +V  I+ + D+  R I ++K+F   S + +       +L  
Sbjct: 486 EMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGDLLSH 545

Query: 521 FKNER 525
           F   R
Sbjct: 546 FTRTR 550