Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 483 a.a., ATP-dependent RNA helicase RhlE from Alteromonas macleodii MIT1002

 Score =  285 bits (730), Expect = 2e-81
 Identities = 159/369 (43%), Positives = 219/369 (59%), Gaps = 5/369 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF  LGL++ +L A+EK+GF+ P+PIQE+AIP +++GK D++  AQTGTGKTA FG+PIL
Sbjct: 2   SFTQLGLAEPLLRAIEKRGFSTPSPIQEKAIPEVLQGK-DVLAAAQTGTGKTAGFGLPIL 60

Query: 63  ETIDE----HSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIREL 118
           + + E       N +ALIL PTRELA QV E I +      L    V+GG  I+ Q+ +L
Sbjct: 61  QRLMEGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKL 120

Query: 119 RRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKR 178
           R+GV +++ TPGR+LD   +  +K   +  +VLDEAD ML+MGFI D++ +LK +  +++
Sbjct: 121 RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPQERQ 180

Query: 179 MLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDT 238
            LLFSAT  D I  LAK   R    I       T     Q    I    K   L  +I  
Sbjct: 181 SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICLIKQ 240

Query: 239 EKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVAT 298
           +K    L+F +TK   + +A +L      +  +HG+ +Q  R K L  FK   I VLVAT
Sbjct: 241 QKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVLVAT 300

Query: 299 DVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQK 358
           D+AARGIDI++L  VVN D+P     YVHRIGRTGRAG  G A +FV   E +  K I+ 
Sbjct: 301 DIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIET 360

Query: 359 IAKTEIKRE 367
           + +  + RE
Sbjct: 361 LIQKLLPRE 369