Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 596 a.a., Cold-shock DEAD box protein A from Alteromonas macleodii MIT1002

 Score =  398 bits (1023), Expect = e-115
 Identities = 224/539 (41%), Positives = 332/539 (61%), Gaps = 17/539 (3%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +FK+L L + IL+ALEK G+  P+PIQ ++IP+L+EG  D++GQAQTGTGKTAAF +P+L
Sbjct: 8   TFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEG-HDLLGQAQTGTGKTAAFALPML 66

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSIKG-SKRLNVFPVYGGQSIDRQIRELRRG 121
             ID   R  Q L+LAPTRELAIQVAE        S+++ V PVYGGQS D QIR+L+RG
Sbjct: 67  ANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
           VQ+VVGTPGRI+DHI R+T+ L  + ++VLDEADEML MGFIDDVE IL     +++  L
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTAL 186

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT+P  I K+ + Y+++   IK+  +  T +   Q + +I    K E L+RI++ E  
Sbjct: 187 FSATMPGPIKKITQRYLKDPKHIKIASKVSTASTIRQRYCQIAPHHKLEALTRIMEVEVF 246

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              +IF +TK    E+A++L+ +GY  E L+GD+ QA RE+T++K K  KI++LVATDV 
Sbjct: 247 DGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVATDVV 306

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+D+  ++HV+N+DIP + ESYVHRIGRTGRAG+QG AI F+   E R    I+K  K
Sbjct: 307 ARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIEKTTK 366

Query: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLE--DADPQEVLSAV 419
             I+   +P + +I   +  +    + E  +         +   + +  +A P+ +++A+
Sbjct: 367 QPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIVEMIKDENEASPEVLMAAL 426

Query: 420 LKYALKDE---LSESNYKKIGRGSQRS--ERSGRN-DSRGRRSFAPGEN-------VRLF 466
           LK A  DE   L ES+   I    QR   ER+ R+ D R R+   P  N        R  
Sbjct: 427 LKIAQGDEPLILKESDRPDINSKPQRDSRERNSRDRDGRERKPRVPRGNRKPEEGMQRFR 486

Query: 467 VALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFKNER 525
           + +G +    P  +V  I+ ++++  + I  +++++ FS V +     +   D+ +  R
Sbjct: 487 IEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPEGMPKETRDTLQGTR 545