Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 503 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  292 bits (748), Expect = 2e-83
 Identities = 177/468 (37%), Positives = 266/468 (56%), Gaps = 22/468 (4%)

Query: 1   MESFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIP 60
           M +F +LGLS ++L A+   G+T PTPIQ  AIP  +E KRDI G AQTGTGKTA+F +P
Sbjct: 1   MTTFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALE-KRDICGIAQTGTGKTASFVLP 59

Query: 61  ILETIDE---HSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRE 117
           +L  +++    +R  + LIL PTRELA QVAE  +    + +LNV  + GG S + Q R+
Sbjct: 60  MLTLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRK 119

Query: 118 LRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDK 177
           L RG  +++ TPGR+LDH  R  + +  V  +V+DEAD ML+MGFI D+E I K +   +
Sbjct: 120 LERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR 179

Query: 178 RMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRD--KFELLSRI 235
           + L FSAT+P  I KLA  +++    I+V +   T     Q     H++D  K  +L  +
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDL 239

Query: 236 IDTEKEFY--GLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKIN 293
           +  E+      +IFC  K DV ++   L+  G++   LHGDM Q  R   L  F+  ++ 
Sbjct: 240 VRAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLT 299

Query: 294 VLVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKF 353
           +LVA+DVAARG+DI D++HV NFD+P + E YVHRIGRTGRAG+ G A T V  S+ +  
Sbjct: 300 LLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYL 359

Query: 354 KYIQKIAKTEIK-----REEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLE 408
             I+K+   +I+        +P   +   +   +   G KE   SG+  D  +  +    
Sbjct: 360 DAIEKLIAEKIEWLSGDLSSLPAPMESFESNSGR--RGTKE--RSGRGRDRNRRDA---- 411

Query: 409 DADPQEVLSAVLKYALKDELSESNYKKIGRGSQRSERSGRNDSRGRRS 456
            A P E ++   +  +  +++     K+ +  +R E++ RN  R  R+
Sbjct: 412 PASPVENINQDAQSVVDTDIAAHGEDKV-KAERRPEKTPRNSERNSRN 458