Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 305 a.a., site-specific tyrosine recombinase XerD from Rhodanobacter sp000427505 FW510-R12

 Score = 54.3 bits (129), Expect = 2e-12
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPEWLNEDIFGHIV 87
           +   +++Y   LRVSEL+ + +  +N  +GV ++     ++  + V  E L   I  ++ 
Sbjct: 143 RAMLELMYASGLRVSELVELPLAALNPRQGVLRVTGKGGKDRLVPVGEEALVR-IGAYLT 201

Query: 88  DNNL-----KDDDRLFKFKN-----RTYAWELVKKYTKDAKIH-KEFSTHTFRRSRALHL 136
           D        +    LF  +      R   W LVK+Y     I+ K  S H  R S A HL
Sbjct: 202 DARPALAKGRQPAALFLSRRGEGMTRQMFWTLVKRYALKVGINPKRISPHVLRHSFATHL 261

Query: 137 LNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171
           LN G  L  +   L H S++TT  Y  +  + +K+
Sbjct: 262 LNHGADLRALQMLLGHSSLSTTQIYTLVAKEGLKR 296