Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

 Score = 59.3 bits (142), Expect = 6e-14
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPE---WLNE---- 80
           +   ++LY   LRV+EL+++ ++ +NL +GV +++   ++   + +  E   W+      
Sbjct: 137 RAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAIVWVERYMRD 196

Query: 81  ---DIFGHIVDNNLKDDDRLFKFKNRTYAWELVKKYTKDAKIHKEFSTHTFRRSRALHLL 137
              ++ G    + L    R  +   +T+ W  +K   K A I K  S HT R + A HLL
Sbjct: 197 ARSELLGGRPSDVLFPSLRGEQMTRQTF-WHRIKHQAKVAGIGKALSPHTLRHAFATHLL 255

Query: 138 NDGVPLEKVSKYLRHKSINTTMHYLKI 164
           N G  L  V   L H  ++TT  Y  +
Sbjct: 256 NHGADLRVVQMLLGHSDLSTTQIYTHV 282