Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 303 a.a., Site-specific tyrosine recombinase XerD from Variovorax sp. SCN45

 Score = 65.5 bits (158), Expect = 9e-16
 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPE---WLN---ED 81
           +   +++Y   LRVSEL+ ++  +++LN+GV ++L   ++   +    E   W+    E+
Sbjct: 142 RAMLELMYASGLRVSELVALKAIDMSLNDGVLRVLGKGSKERLVPFGGEARRWIERYLEE 201

Query: 82  IFGHIVDNNLKDDDRLFKFKN-----RTYAWELVKKYTKDAKIHKEFSTHTFRRSRALHL 136
               I+D     D  LF         R   W +VKK+   A IH   S HT R + A HL
Sbjct: 202 SRPAILDGQQTPD--LFVTARGAGMTRVMFWIIVKKHATAAGIHVPLSPHTLRHAFATHL 259

Query: 137 LNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171
           LN GV L  V   L H  I+TT  Y  +  + +K+
Sbjct: 260 LNHGVDLRAVQLLLGHADISTTTIYTHVARERLKQ 294