Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 303 a.a., site-specific tyrosine recombinase XerD from Variovorax sp. OAS795

 Score = 64.7 bits (156), Expect = 1e-15
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 13/164 (7%)

Query: 19  IDTVDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPE-- 76
           ++T      +   +++Y   LRVSEL+ ++V +++LN+GV ++L    +   +    E  
Sbjct: 133 VETPLGLRDRAMLELMYASGLRVSELVALKVIDMSLNDGVLRVLGKGNKERLVPFGGEAR 192

Query: 77  -WLN---EDIFGHIVDNNLKDDDRLFKFKN-----RTYAWELVKKYTKDAKIHKEFSTHT 127
            W+    E+    I+D     D  LF         R   W +VKK    A IH   S HT
Sbjct: 193 RWIERYLEESRPAILDGQQTPD--LFVTSRGAGMTRVMFWIIVKKQATAAGIHVPLSPHT 250

Query: 128 FRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171
            R + A HLLN G  L  V   L H  I+TT  Y  +  + +K+
Sbjct: 251 LRHAFATHLLNHGADLRAVQLLLGHADISTTTIYTHVARERLKQ 294