Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

 Score = 60.5 bits (145), Expect = 3e-14
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 9/146 (6%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPE---WLNE-DIF 83
           +   ++LY   LRV+EL+++ +  +NL +GV +++   ++   + +  E   WL      
Sbjct: 137 RAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAVVWLERYQRD 196

Query: 84  GHIVDNNLKDDDRLFKFKN-----RTYAWELVKKYTKDAKIHKEFSTHTFRRSRALHLLN 138
           G     N +  D LF  +      R   W  +K + + A I K  S HT R + A HLLN
Sbjct: 197 GRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLRHAFATHLLN 256

Query: 139 DGVPLEKVSKYLRHKSINTTMHYLKI 164
            G  L  V   L H  ++TT  Y  +
Sbjct: 257 HGADLRVVQMLLGHSDLSTTQIYTHV 282