Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 306 a.a., Tyrosine recombinase XerD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 66.2 bits (160), Expect = 5e-16
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 13/156 (8%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQIC---VIPEWLNEDIFG 84
           +   +++Y   LRVSEL+T++  ++ +NE V ++     +   +    +  +WL   +  
Sbjct: 141 RCMLELIYASGLRVSELVTLKTWHVGMNEHVLRITGKGNKERLVPFGQLAGQWLQRYLGQ 200

Query: 85  HIVD--NNLKDDD--------RLFKFKNRTYAWELVKKYTKDAKIHKEFSTHTFRRSRAL 134
             V+  N  + +D        R  +   R   W+LVKKY   A I    S HT R + A 
Sbjct: 201 ARVEILNGQQSEDLFVTSRGARAGEAMTRAMFWQLVKKYAAQAGITSPLSPHTLRHAFAT 260

Query: 135 HLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIK 170
           HLLN G  L  V   L H  I+TT  Y  +  + +K
Sbjct: 261 HLLNHGADLRAVQMLLGHADISTTTIYTHVARERLK 296