Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., site-specific tyrosine recombinase XerC (NCBI) from Escherichia coli BW25113

 Score = 50.1 bits (118), Expect = 4e-11
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 20/147 (13%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICV-------IPEWLN- 79
           +   +++YG  LR+SEL+ +++K+++L  G   ++   ++  ++ +       I  WL+ 
Sbjct: 136 RAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDL 195

Query: 80  EDIFGHIVDNNLKDDDRLF--KFKNRTYAWELVKKYTK---DAKIHKEFSTHTFRRSRAL 134
            D+FG        +DD LF  K   R  A  + K++ +      ++     H  R S A 
Sbjct: 196 RDLFG-------SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFAT 248

Query: 135 HLLNDGVPLEKVSKYLRHKSINTTMHY 161
           H+L     L  V + L H +++TT  Y
Sbjct: 249 HMLESSGDLRGVQELLGHANLSTTQIY 275