Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., site-specific tyrosine recombinase XerD (NCBI) from Escherichia coli BW25113

 Score = 54.7 bits (130), Expect = 2e-12
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPE---WLNEDI-- 82
           K   ++LY   LRVSEL+ + + +I+L +GV +++    +   + +  E   WL   +  
Sbjct: 136 KAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEH 195

Query: 83  -----FGHIVDNNLKDDDRLFKFKNRTYAWELVKKYTKDAKIHKE-FSTHTFRRSRALHL 136
                   +  + L    R  +   +T+ W  +K Y   A I  E  S H  R + A HL
Sbjct: 196 GRPWLLNGVSIDVLFPSQRAQQMTRQTF-WHRIKHYAVLAGIDSEKLSPHVLRHAFATHL 254

Query: 137 LNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171
           LN G  L  V   L H  ++TT  Y  +  + +++
Sbjct: 255 LNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289