Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., tyrosine recombinase XerD from Enterobacter asburiae PDN3

 Score = 54.7 bits (130), Expect = 2e-12
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPE---WLNEDI-F 83
           K   ++LY   LRVSEL+ + + +++L +GV +++    +   + +  E   WL   +  
Sbjct: 136 KAMLELLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEH 195

Query: 84  GHIVDNNLKDDDRLFKFKN-----RTYAWELVKKYTKDAKIHKE-FSTHTFRRSRALHLL 137
           G     N    D LF  +      R   W  +K Y   A I  E  S H  R + A HLL
Sbjct: 196 GRPWLLNGTSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHVLRHAFATHLL 255

Query: 138 NDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171
           N G  L  V   L H  ++TT  Y  +  + +++
Sbjct: 256 NHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289