Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Dickeya dadantii 3937

 Score = 56.2 bits (134), Expect = 5e-13
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPE---WLNEDIF- 83
           K   ++LY   LRVSEL+ + + +++L +GV +++    +   + +  E   WL + +  
Sbjct: 137 KAMLELLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLEQYLEY 196

Query: 84  -------GHIVDNNLKDDDRLFKFKNRTYAWELVKKYTKDAKIHK-EFSTHTFRRSRALH 135
                  G  +D  L   +R  +   +T+ W  +K Y   A I   + S H  R + A H
Sbjct: 197 SRPWLLNGQTLDV-LFPSNRAQQMTRQTF-WHRIKHYATLASIDSNKLSPHVLRHAFATH 254

Query: 136 LLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171
           LLN G  L  V   L H  ++TT  Y  +  + +++
Sbjct: 255 LLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 290