Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 308 a.a., Tyrosine recombinase XerD from Alteromonas macleodii MIT1002

 Score = 60.1 bits (144), Expect = 4e-14
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 20  DTVDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICV---IPE 76
           D ++ ++ K   ++LY   LRVSEL+ + +  I+L +GV +++    +   + +     E
Sbjct: 141 DPIECRD-KSMLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERLVPLGEDAIE 199

Query: 77  WLNEDIFGHIVDNNLKDDDRLFKFKN-----RTYAWELVKKYTKDAKIHKEFSTHTFRRS 131
           WL   I         K  D +F  K      R   W  +K Y   A I +  S HT R +
Sbjct: 200 WLLTYIKTARPILASKASDVVFLSKRGQKMTRQTFWHRIKYYAVKAGIEQHLSPHTLRHA 259

Query: 132 RALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIK 170
            A HLLN G  L  V   L H  ++TT  Y  +  + ++
Sbjct: 260 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQ 298