Pairwise Alignments

Query, 248 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 79.7 bits (195), Expect = 5e-20
 Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 10/242 (4%)

Query: 1   MKKICFLMAIVLILAISACISLPSEQITIKTGTLSVGVFKHAPPAVYGQNGELIGFEVEL 60
           MK    L+A +L+  +    S         +G L V      PP  Y +  +L GFE+E+
Sbjct: 1   MKLARLLLASLLLTQVIFTASARPFPDIQASGKLVVATGGEFPPFNYFEGKKLTGFEIEI 60

Query: 61  VSEIAKRMNLNVEFKEYMFSNLLNAVANNEIDCAISDISISPEREKIVSFTRAYSHTELV 120
              + K+M L +E+K   F +LL  +  +  D  +S   I+PER K V F   + +    
Sbjct: 61  AEIVVKKMGLAIEWKTIGFDSLLAGLQQDRWDIVVSSHGITPERAKAVDFASPH-YCSGS 119

Query: 121 VLVRKESGIRTITDLNGKKIGVVDDTIHETKAKSLQKSMDFEIIEYETPIELYNDLNNGK 180
            +V ++  IR   DL GK +GV   + +    + L K    EI  +    ++   L  G+
Sbjct: 120 SIVSRDPAIRGAADLTGKVVGVQTGSTYLENVRKLTKPK--EIKNFPQDRDVRTALATGR 177

Query: 181 IDATISEMDNFKV-----SSYMDQLELIDTLEILYSGIAVNKNNKELLHEMDRVLLELET 235
           +DA ++  D F       S+    L+L D L +     AV K N  L    D+ L E   
Sbjct: 178 VDAWVT--DKFVALAAVKSNPQANLKLGDPLFVERIAAAVGKGNTALAAAYDKALAEALA 235

Query: 236 EG 237
           +G
Sbjct: 236 DG 237