Pairwise Alignments

Query, 248 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 85.5 bits (210), Expect = 9e-22
 Identities = 54/212 (25%), Positives = 109/212 (51%), Gaps = 5/212 (2%)

Query: 41  HAPPAVYGQNGELIGFEVELVSEIAKRMNLNVEFKEYMFSNLLNAVANNEIDCAISDISI 100
           +AP A   ++ +++GF++++++ IAK+  L ++     F+ +  A+ N ++D  IS ++I
Sbjct: 38  YAPFAFENKDKQIVGFDIDIINAIAKQQGLKIKIVNTPFTGIFGALNNGDVDLVISGVTI 97

Query: 101 SPEREKIVSFTRAYSHTELVVLVRKESGIRTITDLNGKKIGVVDDTIHETKAKSLQKSMD 160
           + +R++   FT  Y     ++ + K S + ++ DL GKKI VV  +  +  A        
Sbjct: 98  NDKRKQSYDFTPPYFAARQLIALPKNSKVTSLKDLAGKKIAVVSASTADDIASREFGKTS 157

Query: 161 FEIIEYETPIELYNDLNNGKIDATISE--MDNFKVSSYMDQLELIDTLEILYS--GIAVN 216
            +I  +E+   + ++L  G +DA + +  +  ++V+   D L+ ID         GI V 
Sbjct: 158 PDIRRFESTPLIISELAGGGVDAAMGDNGVIAYRVAQNPD-LKTIDDKSFPEEGFGIVVK 216

Query: 217 KNNKELLHEMDRVLLELETEGYIEELKQKWSN 248
           K +K LL ++   L  +  +G    + +KW N
Sbjct: 217 KGDKALLDKLTAGLAAIRADGSYVTIYKKWFN 248