Pairwise Alignments

Query, 187 a.a., DNA-directed RNA polymerase from Methanococcus maripaludis S2

Subject, 774 a.a., transcription accessory protein from Pseudomonas simiae WCS417

 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 80  ELQEVVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEK 138
           EL  +++G + +V  FGAFV +G   DGL+HIS + + F+  DP REA+   +  KV   
Sbjct: 647 ELGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIK-DP-REAVKAGDVVKVKVM 704

Query: 139 GDKVRARIVAVSLREEKKRGSKI 161
              +  + V +S+R     G KI
Sbjct: 705 EVDIPRKRVGLSMRMSDTPGEKI 727